Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015885022.1_cds_XP_016439035.1_34633
CDS Infomation

[gene=LOC107764972] [db_xref=GeneID:107764972] [protein=probable E3 ubiquitin-protein ligase HIP1] [protein_id=XP_016439035.1] [location=join(7692..8831,8916..8966,9048..9146,9593..9757,10557..10709)] [gbkey=CDS]
Sequence

ATGGATGAATATTCTGCTAAAAAAACTGCTAATGGCCTTATTGCCCGGGGAAGAGGTTTG
AGGCAGACTGCTGACAACAAAGATAAAAATGTTCAGTATTGCACTCGAGTTGGATGTACT
GGCCGAGTCAACTATATGAAGAGTTCCAGAGTTGGAGGCATGGAGAAAGCCAGACAGTTA
AGGCCTGCTTTCGGTTCTTCAAATGGGAAGGAAGTCGTTGGCAGTTCATCTATCACATCT
TCTACAATGACTAGTGCGGGAAGGTCATGCAAAGAATCTCATAGAAAATCGTTGTCCAAC
ATTGAGAATAAGCAATCAGATACCAGTTCCTTACATGAAGAGCCAGTAGTTTTCAAACAG
ACGCAGTCATCAGCAAAAGATACTGGATCCAGCAAAGTTACATTAGCAGAAATTGGGTCC
TCTAGTGGAACATCAAGCAGTAGACCTCGAAAAATATTTGGTCACAGGCATGGTTCTTTC
AACCAAAAGAGTCCAATGGATTCCTCTGTTTCTTCATCATCTAAATCCATTAGTGCTGGG
ACAAGGGGCGGCAGTAGTAGTGGAGAGGGATATAGGTTGAGAAATCTGAAGTGCAATTCT
GTATCAGATGTCCTCCCATATAGTTGTTCACCATCAGAATCAAGTATTAGTAGAAGGGAC
ACAGTAAAAAGGAGAAATGCTGAAGGTGAAAGCAGTTCATCATCTAAAGGGAAGAAAATG
AGTGGCGCATCACCAAATGAAGGACGTGCCGTTCGTCCTGCTACTGGAATCTCCATATCT
GATTCAAGGAGTAATAGAAGTTCGGATTTTGGTGCGGGTAATCGTGCTCTATCAGTTAGG
ACCCGCAGGTCAATGAATGTGAATACTAGGTTGCGGGGTTCTTTACAGGAGTCATTGCAG
ACCAGCCAAAATTTACCTCAGCCTGAAACTCCAACTCTAGATAATCCTAGTTCGTCCAGT
CAATTTTTCACAGATTCTTCATCAAGTGAATTTAGTGCTTATAGTTTACCTAGAAACGAC
GATGACGATGATGATGATGAGTTACCTGGTGTAGTGCCTTTCACTTCTGCTGATGTCGGC
ATTAACAGATTTATGAACCGTGATGCATTGCAACGATATAACATGGATGGAGTAGCGCAG
GTATTGGTGGCACTTGAGAGAATTGAACAAGATGAAGAGTTATCATATGAGAGACTGCTT
GCGTTGGAGACCAATTTGTTCCTCAGTGGCCTTAACTTCTATGACCAGCACAGAGGGATG
AGATTAGATATCGATGACATGTCCTATGAGGAATTATTAGCTCTTGAGGAGAGGATTGGC
TCTGTTAGTACAGCTCTGCCCGAGGAAGCACTATCAAAGTGCCTCCGGAAAAGCATTTAT
CAGGGTATGGATTCAAAAACAGAAACATATGAAGCTGATGGGGATGGAGATGACATCAAG
TGCAGTATTTGTCAGGAGGAGTATGTGATTGGAGATGAAATAGGGAAGTTGGGATGTGAG
CACGGGTATCATTTGGAGTGCATAACACAGTGGTTTAGGCTCAAGAACTGGTGCCCGATC
TGTAAGGCTACAGCAGCTCCGTCAGAGTCGTCGAAAAAGCCATCTTAG

Peptide Sequence

PEP ID

XP_016439035.1
PEP Infomation

PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana tabacum]
Sequence

MDEYSAKKTANGLIARGRGLRQTADNKDKNVQYCTRVGCTGRVNYMKSSRVGGMEKARQL
RPAFGSSNGKEVVGSSSITSSTMTSAGRSCKESHRKSLSNIENKQSDTSSLHEEPVVFKQ
TQSSAKDTGSSKVTLAEIGSSSGTSSSRPRKIFGHRHGSFNQKSPMDSSVSSSSKSISAG
TRGGSSSGEGYRLRNLKCNSVSDVLPYSCSPSESSISRRDTVKRRNAEGESSSSSKGKKM
SGASPNEGRAVRPATGISISDSRSNRSSDFGAGNRALSVRTRRSMNVNTRLRGSLQESLQ
TSQNLPQPETPTLDNPSSSSQFFTDSSSSEFSAYSLPRNDDDDDDDELPGVVPFTSADVG
INRFMNRDALQRYNMDGVAQVLVALERIEQDEELSYERLLALETNLFLSGLNFYDQHRGM
RLDIDDMSYEELLALEERIGSVSTALPEEALSKCLRKSIYQGMDSKTETYEADGDGDDIK
CSICQEEYVIGDEIGKLGCEHGYHLECITQWFRLKNWCPICKATAAPSESSKKPS

Transcript Sequence

Gene sequence data has not been registered.